Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs6716393 chr2:1050654 T/C 1.55E-8 105 0 16.3 14.13 KM Plot
LAML rs6716769 chr2:174129364 T/G 0.000186 108 16.17 11.67 0 KM Plot
LAML rs6717150 chr2:1051416 A/C 1.55E-8 105 0 16.3 14.13 KM Plot
LAML rs6720459 chr2:174130075 C/T 0.000142 111 0 12.63 16.23 KM Plot
LAML rs67205460 chr10:1090366 C/T 1.92E-5 110 13.15 20.83 2.55 KM Plot
LAML rs6725952 chr2:3224494 T/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs6731356 chr2:3211291 G/C 4.54E-5 109 0 18.78 14.18 KM Plot
LAML rs6739456 chr2:238385092 G/C 0.000101 109 12.65 20.77 0 KM Plot
LAML rs6740722 chr2:238393288 T/C 0.000115 111 12.65 21.32 0 KM Plot
LAML rs67514268 chr19:12593539 C/T 5.31E-6 110 5.62 22.83 12.65 KM Plot
LAML rs6760890 chr2:238400645 G/A 0.000103 111 12.65 18.25 0 KM Plot
LAML rs6760913 chr2:238400702 C/T 0.000103 111 12.65 18.25 0 KM Plot
LAML rs67696450 chr10:1090684 C/T 1.92E-5 110 13.15 20.83 2.55 KM Plot
LAML rs67806792 chr13:114940383 G/C 3.32E-6 109 14.22 19.28 0 KM Plot
LAML rs67988101 chr19:12580365 G/A 4.98E-6 110 6.63 22.37 13.1 KM Plot